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Laminin enterocyte of colon #2609

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JABelfiore
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@JABelfiore JABelfiore linked an issue Sep 24, 2024 that may be closed by this pull request
[NTR] laminin enterocyte of colon #2583
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@JABelfiore JABelfiore requested review from AvolaAmg and Caroline-99 and removed request for AvolaAmg September 24, 2024 14:58
@JABelfiore JABelfiore marked this pull request as ready for review September 26, 2024 09:11
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dosumis commented Sep 26, 2024

#gogoeditdiff

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Here's a diff of how these changes impact the classified ontology (on -simple file):

Ontology comparison

Left

  • Ontology IRI: http://purl.obolibrary.org/obo/cl/cl-simple.owl
  • Version IRI: http://purl.obolibrary.org/obo/cl/releases/2024-09-26/cl-simple.owl
  • Loaded from: file:/__w/cell-ontology/cell-ontology/src/ontology/cl-simple-master.owl/cl-simple.owl

Right

  • Ontology IRI: http://purl.obolibrary.org/obo/cl/cl-simple.owl
  • Version IRI: http://purl.obolibrary.org/obo/cl/releases/2024-09-26/cl-simple.owl
  • Loaded from: file:/__w/cell-ontology/cell-ontology/src/ontology/cl-simple-pr.owl/cl-simple.owl

Ontology imports

Ontology annotations

laminin enterocyte of colon http://purl.obolibrary.org/obo/CL_4047021

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Here's a diff of your edit file (unreasoned)

Ontology comparison

Left

  • Ontology IRI: http://purl.obolibrary.org/obo/cl.owl
  • Version IRI: None
  • Loaded from: file:/__w/cell-ontology/cell-ontology/master/src/ontology/cl-edit.owl

Right

  • Ontology IRI: http://purl.obolibrary.org/obo/cl.owl
  • Version IRI: None
  • Loaded from: file:/__w/cell-ontology/cell-ontology/branch/src/ontology/cl-edit.owl

Ontology imports

Ontology annotations

laminin enterocyte of colon http://purl.obolibrary.org/obo/CL_4047021

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Caroline-99 commented Sep 26, 2024 •
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This PR is still in progress - Need new references to support the definition + consider renaming to laminin colonocytes

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Caroline-99 requested changes Sep 27, 2024
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src/ontology/cl-edit.owl
@@ -32547,6 +32548,15 @@ AnnotationAssertion(terms:date obo:CL_4047019 "2024-09-24T12:11:09Z"^^xsd:dateTi
AnnotationAssertion(rdfs:label obo:CL_4047019 "early enterocyte"@en)
EquivalentClasses(obo:CL_4047019 ObjectIntersectionOf(obo:CL_0000584 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0013740)))

# Class: obo:CL_4047021 (laminin enterocyte of colon)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:14585148") Annotation(oboInOwl:hasDbXref "PMID:35101094") obo:IAO_0000115 obo:CL_4047021 "An enterocyte located in the epithelium of the large intestine. This cell expresses and interacts with specific laminin isoforms, particularly laminin-332 (composed of α3, β3, and γ2 chains) and laminin-511 (composed of α5, β1, and γ1 chains). Laminin enterocytes of the colon are attached to the basement membrane via hemidesmosomes containing α6β4 integrin, which binds to laminins. This cell exhibits differential expression of laminin chains along the crypt-surface axis")
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These references are not relevant - new references are needed to support the definition.

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@Caroline-99 Caroline-99 Caroline-99 requested changes

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[NTR] laminin enterocyte of colon
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@JABelfiore @dosumis @Caroline-99