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Fixes #2914 revise vasa recta (#3349)
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* Fixes #2914 revise vasa recta

Fixes #2914 revise vasa recta

* Relabel missing terms

* Fix dbxref
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aleixpuigb authored Sep 20, 2024
1 parent 5008d41 commit e22380d
Showing 1 changed file with 12 additions and 15 deletions.
27 changes: 12 additions & 15 deletions src/ontology/uberon-edit.obo
Original file line number Diff line number Diff line change
Expand Up @@ -91082,17 +91082,15 @@ property_value: taxon_notes "Piriform cortical regions are present in the brains
[Term]
id: UBERON:0004726
name: vasa recta
def: "In the blood supply of the kidney, the vasa recta renis (or straight arteries of kidney, or straight arterioles of kidney) form a series of straight capillaries in the medulla. They lie parallel to the loop of Henle. These vessels branch off the efferent arterioles of juxtamedullary nephrons (those nephrons closest to the medulla), enter the medulla, and surround the loop of Henle." [Wikipedia:Vasa_recta]
def: "A group of microvessels that are part of the kidney. A vasa recta has a hairpin-like shape, entering the renal medulla as the straight arterioles and surrounds the loop of Henle, forming a capillary network. Finally it leaves the renal medulla to ascend to the cortex as the straight venules. The primary function of the vasa recta is to facilitate countercurrent exchange, which is essential for the kidney's ability to concentrate urine" [PMID:23126245, Wikipedia:Vasa_recta]
subset: pheno_slim
synonym: "arteria recta" RELATED [Wikipedia:Vasa_recta]
synonym: "arteriae rectae" RELATED [Wikipedia:Vasa_recta]
synonym: "arteriolae rectae renis" EXACT OMO:0003011 [FMA:72006, FMA:TA]
synonym: "arteriolae rectae renis" NARROW OMO:0003011 [FMA:72006, FMA:TA]
synonym: "arteriolae rectae renis" RELATED OMO:0003011 [Wikipedia:Vasa_recta]
synonym: "arteriolae recti" RELATED [Wikipedia:Vasa_recta]
synonym: "kidney vasa recta" EXACT [MP:0011324]
synonym: "renal medullary capillary" EXACT [EMAPA:30043]
synonym: "set of straight arterioles of kidney" EXACT [FMA:72006]
synonym: "straight arterioles of kidney" EXACT [FMA:72006]
synonym: "renal medullary capillary" NARROW [EMAPA:30043]
synonym: "set of straight arterioles of kidney" NARROW [FMA:72006]
synonym: "straight arterioles of kidney" NARROW [FMA:72006]
synonym: "vasa recta of kidney" EXACT [FMA:72006]
synonym: "vasa recta renis" EXACT OMO:0003011 [FMA:72006, FMA:TA]
synonym: "vasa rectae" RELATED [Wikipedia:Vasa_recta]
Expand All @@ -91101,9 +91099,8 @@ xref: FMA:72006
xref: galen:ArteriaeRectae
xref: MA:0002595
xref: Wikipedia:Vasa_recta
is_a: UBERON:0001140 ! renal vein
is_a: UBERON:0006544 ! kidney vasculature
property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/2/21/Kidney_nephron.png" xsd:anyURI
property_value: editor_note "TODO - is this a vein or set of veins? in MA it is a venous blood vessel" xsd:string

[Term]
id: UBERON:0004727
Expand Down Expand Up @@ -130066,39 +130063,39 @@ relationship: part_of UBERON:0009074 ! syrinx organ

[Term]
id: UBERON:0009089
name: inner medulla vasa recta descending limb
name: inner medulla descending vasa recta
xref: KUPO:0001003
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0004776 {source="KUPO"} ! inner renal medulla vasa recta
property_value: external_ontology_notes "This class was created in order to align KUPO with CL. The original class was undefined, and the intended meaning is not clear, may be obsoleted in future. The vasa recta is parallel to the loop of Henles, this may refer to the portion of the vasa recta in the inner medullar parallel to the descending limb" xsd:string {external_ontology="CL"}

[Term]
id: UBERON:0009090
name: outer medulla vasa recta descending limb
name: outer medulla descending vasa recta
xref: KUPO:0001004
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0004775 {source="KUPO"} ! outer renal medulla vasa recta
property_value: external_ontology_notes "This class was created in order to align KUPO with CL. The original class was undefined, and the intended meaning is not clear, may be obsoleted in future. The vasa recta is parallel to the loop of Henles, this may refer to the portion of the vasa recta in the outer medullar parallel to the descending limb" xsd:string {external_ontology="CL"}

[Term]
id: UBERON:0009091
name: vasa recta ascending limb
name: ascending vasa recta
xref: KUPO:0001005
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0004726 {source="KUPO"} ! vasa recta
property_value: external_ontology_notes "This class was created in order to align KUPO with CL. The original class was undefined, and the intended meaning is not clear, may be obsoleted in future. The vasa recta is parallel to the loop of Henles, this may refer to the portion of the vasa recta parallel to the ascending limb" xsd:string {external_ontology="CL"}

[Term]
id: UBERON:0009092
name: inner medulla vasa recta ascending limb
name: inner medulla ascending vasa recta
xref: KUPO:0001006
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0004776 {source="KUPO"} ! inner renal medulla vasa recta
property_value: external_ontology_notes "This class was created in order to align KUPO with CL. The original class was undefined, and the intended meaning is not clear, may be obsoleted in future. The vasa recta is parallel to the loop of Henles, this may refer to the portion of the vasa recta in the inner medulla parallel to the ascending limb" xsd:string {external_ontology="CL"}

[Term]
id: UBERON:0009093
name: outer medulla vasa recta ascending limb
name: outer medulla ascending vasa recta
xref: KUPO:0001007
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0004775 {source="KUPO"} ! outer renal medulla vasa recta
Expand Down Expand Up @@ -130697,7 +130694,7 @@ relationship: part_of UBERON:0002113 ! kidney

[Term]
id: UBERON:0009202
name: vasa recta descending limb
name: descending vasa recta
xref: KUPO:0001002
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0004726 {source="KUPO"} ! vasa recta
Expand Down

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