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- Modular and user-friendly platform for AI-assisted rescoring of peptide identifications
ms2pip
PublicMS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.- Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python
mumble
Publicms2rescore-rs
Publicmolexpress
Public- Highly adaptable common interface for proteomics search and de novo engines
DeepLC
PublicDeepLC: Retention time prediction for (modified) peptides using Deep Learning.IM2Deep
PublicCollisional cross-section prediction for modified peptidespeptide-shaker
PublicInterpretation of proteomics identification resultscompomics-utilities
PublicOpen source Java library for computational proteomicsreporter
PublicProtein quantification based on reporter ionsThermoRawFileParserGUI
PublicGraphical user interface for the ThermoRawFileParserThermoRawFileParser
Publicbioconda-recipes
PublictabloidProteome
Publicdenovogui
PublicGraphical user interface for de novo sequencing of tandem mass spectracompomics.github.io
PublicCOSS
Publicmoff-gui
PublicCALLC
Publicjsparklines
Publiccellmissy
Publiccolims
Publicmitraq
Publicpepshell
Public