Skip to content
@compomics

Computational Omics and Systems Biology Group

The CompOmics group, headed by Prof. Dr. Lennart Martens, specializes in the management, analysis and integration of high-throughput Omics data.

Pinned Loading

  1. ThermoRawFileParser ThermoRawFileParser Public

    Thermo RAW file parser that runs on Linux/Mac and all other platforms that support Mono

    C# 183 48

  2. DeepLC DeepLC Public

    DeepLC: Retention time prediction for (modified) peptides using Deep Learning.

    Python 53 18

  3. ms2rescore ms2rescore Public

    Modular and user-friendly platform for AI-assisted rescoring of peptide identifications

    Python 49 15

  4. compomics-utilities compomics-utilities Public

    Open source Java library for computational proteomics

    Java 30 17

  5. peptide-shaker peptide-shaker Public

    Interpretation of proteomics identification results

    Java 48 19

  6. searchgui searchgui Public

    Highly adaptable common interface for proteomics search and de novo engines

    Java 40 16

Repositories

Showing 10 of 92 repositories
  • ms2rescore Public

    Modular and user-friendly platform for AI-assisted rescoring of peptide identifications

    compomics/ms2rescore’s past year of commit activity
    Python 49 Apache-2.0 15 10 5 Updated Oct 2, 2024
  • ms2pip Public

    MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.

    compomics/ms2pip’s past year of commit activity
    HTML 38 Apache-2.0 18 11 4 Updated Oct 1, 2024
  • psm_utils Public

    Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python

    compomics/psm_utils’s past year of commit activity
    Python 24 Apache-2.0 6 7 (2 issues need help) 0 Updated Oct 1, 2024
  • mumble Public

    Finding the perfect modification for your mass shift

    compomics/mumble’s past year of commit activity
    Python 2 Apache-2.0 1 1 0 Updated Sep 27, 2024
  • lesSDRF Public
    compomics/lesSDRF’s past year of commit activity
    Jupyter Notebook 5 Apache-2.0 6 1 0 Updated Sep 27, 2024
  • ms2rescore-rs Public

    Rust functionality for the MS²Rescore package

    compomics/ms2rescore-rs’s past year of commit activity
    Rust 2 Apache-2.0 0 0 1 Updated Sep 23, 2024
  • molexpress Public

    Graph Neural Networks with Keras 3

    compomics/molexpress’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Sep 19, 2024
  • searchgui Public

    Highly adaptable common interface for proteomics search and de novo engines

    compomics/searchgui’s past year of commit activity
    Java 40 16 13 (8 issues need help) 0 Updated Sep 19, 2024
  • DeepLC Public

    DeepLC: Retention time prediction for (modified) peptides using Deep Learning.

    compomics/DeepLC’s past year of commit activity
    Python 53 Apache-2.0 18 5 0 Updated Sep 19, 2024
  • IM2Deep Public

    Collisional cross-section prediction for modified peptides

    compomics/IM2Deep’s past year of commit activity
    Python 7 Apache-2.0 0 0 1 Updated Sep 14, 2024
View all repositories

Top languages

Loading…

Most used topics

Loading…