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Interactive pipeline debugging #1074

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Interactive pipeline debugging

Interactive pipeline debugging #1074

Workflow file for this run

.github/workflows/main.yml at 3325a6b
name: caput-ci-build
on:
pull_request:
branches:
- master
push:
branches:
- master
jobs:
lint-code:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- name: Set up Python 3.12
uses: actions/setup-python@v5
with:
python-version: "3.12"
- name: Install apt dependencies
run: |
sudo apt-get update
sudo apt-get install -y libopenmpi-dev openmpi-bin libhdf5-serial-dev
- name: Install pip dependencies
run: |
pip install -e .
pip install -e .[lint]
- name: Run ruff (flake8 and pydocstyle)
run: ruff check .
- name: Check code with black
run: black --check .
run-tests:
strategy:
matrix:
python-version: ["3.9", "3.12"]
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- name: Install apt dependencies
run: |
sudo apt-get update
sudo apt-get install -y libopenmpi-dev openmpi-bin libhdf5-serial-dev
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v5
with:
python-version: ${{ matrix.python-version }}
- name: Install pip dependencies
run: |
pip install -e .[compression,mpi,test]
- name: Run serial tests
run: pytest --doctest-modules .
- name: Run parallel tests
run: |
mpirun --oversubscribe -np 4 pytest tests/test_memh5_parallel.py
mpirun --oversubscribe -np 4 pytest tests/test_mpiarray.py
mpirun -np 1 pytest tests/test_selection_parallel.py
mpirun --oversubscribe -np 2 pytest tests/test_selection_parallel.py
mpirun --oversubscribe -np 4 pytest tests/test_selection_parallel.py
build-docs:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- name: Set up Python 3.12
uses: actions/setup-python@v5
with:
python-version: "3.12"
- name: Install apt dependencies
run: |
sudo apt-get update
sudo apt-get install -y libhdf5-serial-dev
- name: Install pip dependencies
run: |
pip install -e .
pip install -e .[docs]
- name: Build sphinx docs
run: sphinx-build -W -b html doc/ doc/_build/html