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SMaHT Data Analysis Center

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  1. smaht-portal smaht-portal Public

    SMaHT Data Analysis Center Web Portal

    Python 3

  2. main-pipelines main-pipelines Public

    main repository for SMaHT pipelines

    Dockerfile 2

  3. rnaseq-pipelines rnaseq-pipelines Public

    components for RNA-seq pipelines

    Python 1

  4. qc-pipelines qc-pipelines Public

    components for quality control pipelines

    Common Workflow Language

  5. pipelines-docs pipelines-docs Public

    pipelines documentation

  6. sentieon-pipelines sentieon-pipelines Public

    sentieon components for analysis pipelines

    Shell

Repositories

Showing 10 of 21 repositories
  • hms-utils Public

    Miscellaneous Python utilities from David Michaels @ HMS DBMI

    smaht-dac/hms-utils’s past year of commit activity
    Python 0 0 0 0 Updated Nov 19, 2024
  • smaht-portal Public

    SMaHT Data Analysis Center Web Portal

    smaht-dac/smaht-portal’s past year of commit activity
    Python 3 MIT 0 0 20 Updated Nov 18, 2024
  • shared-pipelines Public Forked from dbmi-bgm/cgap-pipeline-base

    shared components for analysis pipelines

    smaht-dac/shared-pipelines’s past year of commit activity
    Common Workflow Language 0 GPL-3.0 1 0 0 Updated Nov 15, 2024
  • sentieon-pipelines Public

    sentieon components for analysis pipelines

    smaht-dac/sentieon-pipelines’s past year of commit activity
    Shell 0 0 0 0 Updated Nov 15, 2024
  • rnaseq-pipelines Public

    components for RNA-seq pipelines

    smaht-dac/rnaseq-pipelines’s past year of commit activity
    Python 1 GPL-3.0 0 0 0 Updated Nov 15, 2024
  • alignment-pipelines Public

    components for alignment pipelines

    smaht-dac/alignment-pipelines’s past year of commit activity
    Common Workflow Language 0 GPL-3.0 0 0 0 Updated Nov 15, 2024
  • qc-pipelines Public

    components for quality control pipelines

    smaht-dac/qc-pipelines’s past year of commit activity
    Common Workflow Language 0 GPL-3.0 0 0 0 Updated Nov 13, 2024
  • qc-parser Public

    Parses outputs of different QC tools and unifies them for the SMaHT portal

    smaht-dac/qc-parser’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Nov 8, 2024
  • main-pipelines Public

    main repository for SMaHT pipelines

    smaht-dac/main-pipelines’s past year of commit activity
    Dockerfile 2 GPL-3.0 0 0 1 Updated Nov 6, 2024
  • submitr Public
    smaht-dac/submitr’s past year of commit activity
    Python 0 MIT 0 0 1 Updated Oct 31, 2024
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