FEA ridge benchmarks #106
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| name: Run CPU benchmarks on a few data sample | |
| on: | |
| pull_request: | |
| push: { branches: main } | |
| schedule: | |
| - cron: '00 00 * * 1' | |
| env: | |
| _SCIKIT_LEARN_COMMIT: 2ccfc8c4bdf66db005d7681757b4145842944fb9 | |
| _SKLEARN_NUMBA_DPEX_COMMIT: e7a9c6da4bc16bbaf82a3a6e461decd209e2c910 | |
| _SKLEARN_PYTORCH_ENGINE_COMMIT: e962dea262ba4d6e9873fced395e815a02a17fd0 | |
| _KMEANS_DPCPP_COMMIT: dceaa6418463c7921ba56dfcc80e3aeda0bcd5c3 | |
| _BENCHOPT_VERSION: ==1.5.1 | |
| _ONEAPI_INSTALLER_URL: https://registrationcenter-download.intel.com/akdlm/IRC_NAS/992857b9-624c-45de-9701-f6445d845359 | |
| _ONEAPI_INSTALL_BINARY_NAME: l_BaseKit_p_2023.2.0.49397.sh | |
| _ONEAPI_COMPONENTS: "intel.oneapi.lin.dpcpp-cpp-compiler:intel.oneapi.lin.mkl.devel" | |
| # TODO: setup runners with compatible gpus and also test gpu benchmarks | |
| jobs: | |
| build_scikit_learn: | |
| name: Build scikit-learn | |
| runs-on: ubuntu-latest | |
| container: jjerphan/numba_dpex_dev:latest | |
| steps: | |
| - name: Cache scikit-learn wheel | |
| id: wheels-cache | |
| uses: actions/cache@v3 | |
| with: | |
| path: scikit-learn/dist/ | |
| key: sklearn-${{ env._SCIKIT_LEARN_COMMIT}} | |
| - if: ${{ steps.wheels-cache.outputs.cache-hit != 'true' }} | |
| name: Build scikit-learn | |
| run: | | |
| apt-get update --quiet | |
| apt-get install -y build-essential python3-dev | |
| pip install cython numpy scipy joblib threadpoolctl build wheel | |
| git clone https://github.com/scikit-learn/scikit-learn.git -b "feature/engine-api" | |
| cd scikit-learn | |
| git checkout $_SCIKIT_LEARN_COMMIT | |
| python setup.py bdist_wheel | |
| - name: Upload wheels | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: binaries | |
| path: scikit-learn*/dist/ | |
| retention-days: 14 | |
| build_kmeans_dpcpp: | |
| name: Build kmeans_dpcpp | |
| runs-on: ubuntu-latest | |
| container: jjerphan/numba_dpex_dev:latest | |
| steps: | |
| - name: Cache kmeans_dpcpp build | |
| id: kmeans-dpcpp-cache | |
| uses: actions/cache@v3 | |
| with: | |
| path: kmeans_dpcpp/ | |
| key: kmeans-dpcpp-${{ env._KMEANS_DPCPP_COMMIT}} | |
| - if: ${{ steps.kmeans-dpcpp-cache.outputs.cache-hit != 'true' }} | |
| name: Install build pre-requisites | |
| run: | | |
| apt-get update --quiet | |
| apt-get install -y --no-install-recommends gawk | |
| pip install cmake ninja packaging setuptools distro scikit-build numpy | |
| - if: ${{ steps.kmeans-dpcpp-cache.outputs.cache-hit != 'true' }} | |
| name: Install necessary oneapi basekit components | |
| run: | | |
| mkdir -p ./opt/intel/oneapi $RUNNER_TEMP/intel/cache $RUNNER_TEMP/intel/download $RUNNER_TEMP/intel/log | |
| wget -P $RUNNER_TEMP/intel/download $_ONEAPI_INSTALLER_URL/$_ONEAPI_INSTALL_BINARY_NAME | |
| chmod +x $RUNNER_TEMP/intel/download/$_ONEAPI_INSTALL_BINARY_NAME | |
| $RUNNER_TEMP/intel/download/$_ONEAPI_INSTALL_BINARY_NAME -a -s --eula accept \ | |
| --action install --components $_ONEAPI_COMPONENTS \ | |
| --install-dir ./opt/intel/oneapi --log-dir $RUNNER_TEMP/intel/log \ | |
| --download-cache $RUNNER_TEMP/intel/cache \ | |
| # HACK: `kmeans_dpcpp` packaging is broken, just run `develop` to build the | |
| # C++ extensions, then later on add it explicitly to PYTHONPATH | |
| - if: ${{ steps.kmeans-dpcpp-cache.outputs.cache-hit != 'true' }} | |
| name: build kmeans_dpcpp | |
| shell: bash | |
| run: | | |
| source ./opt/intel/oneapi/setvars.sh | |
| git clone https://github.com/oleksandr-pavlyk/kmeans_dpcpp.git -b main | |
| cd kmeans_dpcpp | |
| git checkout $_KMEANS_DPCPP_COMMIT | |
| python setup.py develop -- -DCMAKE_CXX_COMPILER:PATH=$(which icpx) -DDPCTL_MODULE_PATH=$(python -m dpctl --cmakedir) | |
| - name: Upload kmeans_dpcpp build files | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: binaries | |
| path: kmeans_dpcpp*/ | |
| retention-days: 14 | |
| run_benchmarks_on_cpu: | |
| name: Run benchmarks | |
| needs: [build_scikit_learn, build_kmeans_dpcpp] | |
| runs-on: ubuntu-latest | |
| container: jjerphan/numba_dpex_dev:latest | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v3 | |
| - name: download scikit-learn wheel | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: binaries | |
| # TODO: instead of installing all dependencies of all solvers in the same | |
| # environment, might be more cautious to have one solver per environment ? | |
| - name: install all dependencies | |
| run: | | |
| git clone https://github.com/soda-inria/sklearn-numba-dpex.git -b main | |
| cd sklearn-numba-dpex | |
| git checkout $_SKLEARN_NUMBA_DPEX_COMMIT | |
| cd ../ | |
| git clone https://github.com/soda-inria/sklearn-pytorch-engine.git -b main | |
| cd sklearn-pytorch-engine | |
| git checkout $_SKLEARN_PYTORCH_ENGINE_COMMIT | |
| cd ../ | |
| # TODO: it seems that non-editable install of sklearn-numba-dpex doesn't work ? | |
| # Fix and update the install command here to avoid having to git clone manually | |
| pip install ./scikit-learn/dist/*.whl scikit-learn-intelex -e ./sklearn-numba-dpex/ -e ./sklearn-pytorch-engine benchopt${_BENCHOPT_VERSION} | |
| pip install torch --index-url https://download.pytorch.org/whl/cpu | |
| - name: Check oneapi default device | |
| run: python -c "import dpctl; dpctl.select_default_device().print_device_info()" | |
| - name: Run benchmarks | |
| run: | | |
| cd benchmarks/kmeans | |
| PYTHONPATH=$PYTHONPATH:$(realpath ../../kmeans_dpcpp/) benchopt run --no-plot -l -d Simulated_correlated_data[n_samples=1000,n_features=14] | |
| cd ../pca | |
| benchopt run --no-plot -l -d Simulated_correlated_data[n_samples=100,n_features=100] | |
| cd ../ridge | |
| benchopt run --no-plot -l -d Simulated_correlated_data[n_samples=100,n_features=100,n_targets=2] |