Reduce log output of MMseqs2 in colabfold_search

sokrypton · Mar 31, 2024 · 61df3b8 · 61df3b8
1 parent be06b20
commit 61df3b8
Showing 1 changed file with 2 additions and 0 deletions.
diff --git a/colabfold/mmseqs/search.py b/colabfold/mmseqs/search.py
@@ -22,6 +22,8 @@
 def run_mmseqs(mmseqs: Path, params: List[Union[str, Path]]):
     params_log = " ".join(str(i) for i in params)
     logger.info(f"Running {mmseqs} {params_log}")
+    # hide MMseqs2 verbose paramters list that clogs up the log
+    os.environ["MMSEQS_CALL_DEPTH"] = "1"
     subprocess.check_call([mmseqs] + params)