fixing esmfold/openfold to use -std=c++17 (needed for cuda12 and pyto…

…rch 2)

ESMFold.ipynb

@@ -68,15 +68,16 @@
         "  os.system(f\"aria2c -q -x 16 https://colabfold.steineggerlab.workers.dev/esm/{model_name} &\")\n",
         "\n",
         "  if not os.path.isfile(\"finished_install\"):\n",
-        "    print(\"installing esmfold...\")\n",
         "    # install libs\n",
-        "    os.system(\"pip install -q omegaconf \\\"pytorch_lightning<2\\\" \\\"torch<2\\\" biopython ml_collections einops py3Dmol\")\n",
+        "    print(\"installing libs...\")\n",
+        "    os.system(\"pip install -q omegaconf pytorch_lightning biopython ml_collections einops py3Dmol modelcif\")\n",
         "    os.system(\"pip install -q git+https://github.com/NVIDIA/dllogger.git\")\n",
         "\n",
+        "    print(\"installing openfold...\")\n",
         "    # install openfold\n",
-        "    commit = \"6908936b68ae89f67755240e2f588c09ec31d4c8\"\n",
-        "    os.system(f\"pip install -q git+https://github.com/aqlaboratory/openfold.git@{commit}\")\n",
+        "    os.system(f\"pip install -q git+https://github.com/sokrypton/openfold.git\")\n",
         "\n",
+        "    print(\"installing esmfold...\")\n",
         "    # install esmfold\n",
         "    os.system(f\"pip install -q git+https://github.com/sokrypton/esm.git\")\n",
         "    os.system(\"touch finished_install\")\n",
@@ -341,4 +342,4 @@
       "outputs": []
     }
   ]
-}
+}