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Update stan submodule #729

Update stan submodule

Update stan submodule #729

Workflow file for this run

---
# Github Actions workflow to check and build StanHeaders and RStan
# yamllint disable rule:line-length
name: R-CMD-check
'on':
push:
branches:
- develop
- experimental
- StanHeaders_*
pull_request:
branches:
- develop
- experimental
- StanHeaders_*
jobs:
R-CMD-check:
if: "! contains(github.event.head_commit.message, '[ci skip]')"
runs-on: ${{ matrix.config.os }}
name: ${{ matrix.config.os }} (${{ matrix.config.r }})
strategy:
fail-fast: true
matrix:
config:
- {os: macOS-latest, r: 'devel'}
- {os: macOS-latest, r: 'release'}
- {os: macOS-latest, r: 'oldrel'}
- {os: windows-latest, r: 'devel'}
- {os: windows-latest, r: 'release'}
- {os: windows-latest, r: 'oldrel'}
- {os: ubuntu-latest, r: 'devel'}
- {os: ubuntu-latest, r: 'release'}
- {os: ubuntu-latest, r: 'oldrel'}
env:
R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
steps:
- uses: actions/checkout@v4
with:
submodules: recursive
- uses: r-lib/actions/setup-r@v2
with:
r-version: ${{ matrix.config.r }}
- uses: r-lib/actions/setup-pandoc@v2
# Use a shorter temp directory for pak installations, due to filename
# length issues on Windows. https://github.com/r-lib/pak/issues/252
- name: Windows temp dir
if: runner.os == 'Windows'
run: |
New-Item -Path "C:\" -Name "tmp" -ItemType Directory
echo "TMPDIR=c:\tmp" | Out-File -FilePath $env:GITHUB_ENV -Encoding utf8 -Append
- uses: r-lib/actions/setup-r-dependencies@v2
with:
working-directory: rstan/rstan
extra-packages: any::rcmdcheck, local::../../StanHeaders
- name: Remove symlinks on Windows
if: runner.os == 'Windows'
run: |
rm -Rf inst/include/src \
inst/include/mathlib \
inst/include/stan \
inst/include/libsundials || true
shell: bash
- uses: r-lib/actions/check-r-package@v2
with:
working-directory: StanHeaders
error-on: '"error"'
env:
_R_CHECK_CRAN_INCOMING_: false
- uses: r-lib/actions/check-r-package@v2
with:
working-directory: rstan/rstan
env:
_R_CHECK_CRAN_INCOMING_: false