Added another article #68
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| name: When citation added, update frontmatter | |
| on: | |
| workflow_dispatch: | |
| push: | |
| branches: | |
| - main | |
| paths: | |
| - downstream/citedin_lookup.yml | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.head_ref || github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| frontmatter: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| with: | |
| submodules: true | |
| fetch-depth: 0 | |
| ref: main | |
| - name: Setup Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: '3.x' | |
| - name: Install deps | |
| run: | | |
| pip install python-frontmatter | |
| - name: Update citedin in frontmatter .md files | |
| run: | | |
| python ./scripts/update_frontmatter_citedin.py | |
| - name: Commit report | |
| run: | | |
| git config --global user.name 'GitHub Action' | |
| git config --global user.email '[email protected]' | |
| git add pathways/*/*.md | |
| if git diff --exit-code --staged; then | |
| echo "No changes" | |
| else | |
| git commit -m 'Update citedin in frontmatter .md files' | |
| git pull --rebase | |
| git push | |
| fi | |
| copy-to-site-repo: | |
| runs-on: ubuntu-latest | |
| needs: [frontmatter] | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| with: | |
| path: wikipathways-database | |
| submodules: true | |
| fetch-depth: 0 | |
| ref: main | |
| - name: Checkout jekyll repo | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: wikipathways/wikipathways.github.io | |
| path: wikipathways.github.io | |
| submodules: true | |
| fetch-depth: 0 | |
| ref: main | |
| ssh-key: ${{ secrets.ACTIONS_DEPLOY_KEY }} | |
| - name: Commit report | |
| run: | | |
| git config --global user.name 'GitHub Action' | |
| git config --global user.email '[email protected]' | |
| cp wikipathways-database/pathways/*/*.md wikipathways.github.io/_pathways/ | |
| cd wikipathways.github.io | |
| git add _pathways/*.md | |
| if git diff --exit-code --staged > /dev/null; then | |
| echo "No changes" | |
| else | |
| git diff --name-only | |
| git commit -m 'Update citedin in frontmatter .md files' | |
| git pull --rebase | |
| git push | |
| fi |