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WIP: Move inferring of spectrum path to parsing psm list? #311

WIP: Move inferring of spectrum path to parsing psm list?

WIP: Move inferring of spectrum path to parsing psm list? #311

Workflow file for this run

name: Test
on:
push:
branches:
- main
pull_request:
jobs:
test:
runs-on: ubuntu-latest
strategy:
matrix:
python-version: ["3.8", "3.9", "3.10", "3.11"]
steps:
- uses: actions/checkout@v4
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v4
with:
python-version: ${{ matrix.python-version }}
- name: Install dependencies
run: |
python -m pip install --upgrade pip
pip install flake8
- name: Lint with flake8
run: |
# stop the build if there are Python syntax errors or undefined names
flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
# exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
- name: Build and install ms2rescore package
run: |
pip install .[dev]
# - name: Test with pytest
# run: |
# pytest
- name: Test installation
run: |
ms2rescore --help