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Fmriprep #399

Merged
merged 25 commits into from
Jun 4, 2024
Merged

Fmriprep #399

merged 25 commits into from
Jun 4, 2024

Commits on Feb 9, 2024

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Commits on Feb 20, 2024

  1. updated csv2nidm to handle case where user supplies -nidm file which …

    …metadata gets added to so no need for -out output file. Previously was requiring -out despite one supplying -nidm. Also updated some of the test case data for fmriprep and a run.sh which does the bids2nidm and then the csv2nidm step to add fmriprep results
    dbkeator committed Feb 20, 2024
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Commits on Feb 21, 2024

  1. working on finding correct session and acquisition entities matching …

    …session, run, task information in derived data
    dbkeator committed Feb 21, 2024
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Commits on Feb 28, 2024

  1. changed BIDS run term...now nidm:run instead of weird mistake coding …

    …it as nidm:acquisition_entity
    dbkeator committed Feb 28, 2024
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Commits on Feb 29, 2024

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Commits on Mar 1, 2024

  1. working on getting qnames right for derived data...namespace not bein…

    …g added...needs to be added with user-defined prefix in Utils/DD_to_nidm function
    dbkeator committed Mar 1, 2024
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Commits on Mar 4, 2024

  1. fixed problem with derived metadata CDEs not using software metadata …

    …title as prefix for namespace and software metadata url as namespace...
    dbkeator committed Mar 4, 2024
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Commits on Mar 5, 2024

  1. WIP: derivative and software metadata added to NIDM graph. Still prob…

    …lems with some urls not written with qnames, visualizer doesn't visualize derivatives so working on that too....
    dbkeator committed Mar 5, 2024
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Commits on Mar 6, 2024

  1. working version for adding derived data to existing nidm file by link…

    …ing subject id, task, run, session. WIP: add derivative info to new NIDM file
    dbkeator committed Mar 6, 2024
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Commits on Mar 11, 2024

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  2. prior version was converting numbers to strings. here we fix this so …

    …rdf file has correct types
    dbkeator committed Mar 11, 2024
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Commits on Mar 14, 2024

  1. working versions of csv2nidm and nidm_visualize for derivative data w…

    …ith json data dictionary. Next step, support CSV data dictionary
    dbkeator committed Mar 14, 2024
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Commits on Mar 19, 2024

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Commits on Apr 5, 2024

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Commits on Apr 8, 2024

  1. fixing up issues with duplicate namespaces for some derivative work a…

    …nd also problems when reading nidm files with derivatives
    dbkeator committed Apr 8, 2024
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Commits on Apr 29, 2024

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Commits on May 21, 2024

  1. fixing bug with missing metadata from agent upon reading nidm to add …

    …additional derived data
    dbkeator committed May 21, 2024
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Commits on Jun 4, 2024

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