cleanup #20

	# This workflow will install Python dependencies, run tests and lint with a single version of Python
	# For more information see: https://docs.github.com/en/actions/automating-builds-and-tests/building-and-testing-python

	name: Python application

	on:
	push:
	branches: [ "Refactor_fgi_file_staging_unit_tests" ]
	pull_request:
	branches: [ "Refactor_fgi_file_staging_unit_tests" ]

	permissions:
	contents: read

	jobs:
	build_lint_test:

	runs-on: ubuntu-latest
	# services:
	# mongodb:
	# image: mongo:latest
	# env:
	# MONGO_INITDB_ROOT_USERNAME: root
	# MONGO_INITDB_ROOT_PASSWORD: password
	# MONGO_INITDB_DATABASE: nmdc
	# MONGO_HOST: localhost
	# ports:
	# - 27017:27017
	steps:
	- uses: actions/checkout@v3
	- name: setup_mongodb
	run: \|
	sudo docker run --rm --detach --name mongodb --publish 27017:27017 mongo:latest --auth
	# --env MONGO_INITDB_ROOT_USERNAME=root --env MONGO_INITDB_ROOT_PASSWORD=password \
	# --env MONGO_INITDB_DATABASE=nmdc \

	# uses: DigiPie/[email protected]
	# with:
	# mongodb-uri: mongodb://localhost:27017
	# mongodb-database: nmdc
	# mongodb-username: root
	# mongodb-password: password
	- name: Set up Python 3.9
	uses: actions/setup-python@v3
	with:
	python-version: "3.9"
	- name: Install Poetry
	uses: snok/install-poetry@v1
	- name: Install dependencies
	run: \|
	poetry install
	- name: Test with pytest
	run: \|
	poetry run pytest ./tests

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