Merge pull request #216 from microbiomedata/107-update-mags-version-f…

…or-workflow-automation

Update MAG workflow config to include mapping file

configs/workflows.yaml

@@ -289,9 +289,8 @@ Workflows:
   - Name: MAGs
     Type: nmdc:MagsAnalysisActivity
     Enabled: True
-    Git_repo: https://github.com/microbiomedata/mg_annotation
     Git_repo: https://github.com/microbiomedata/metaMAGs
-    Version: v1.0.6
+    Version: v1.3.4
     WDL: mbin_nmdc.wdl
     Collection: mags_activity_set
     Predecessors:
@@ -313,6 +312,7 @@ Workflows:
       sam_file: do:Assembly Coverage BAM
       smart_file: do:SMART Annotation GFF
       proteins_file: do:Annotation Amino Acid FASTA
+      map_file: do:Contig Mapping File
       gene_phylogeny_file: do:Gene Phylogeny tsv
       proj: "{activity_id}"
     Activity: