Merge pull request #242 from microbiomedata/240-metat-update

Finalized version of workflows-mt.yaml
microbiomedata · Sep 6, 2024 · 851840d · 851840d
2 parents 683f178 + 7152457
commit 851840d
Showing 1 changed file with 9 additions and 24 deletions.
diff --git a/configs/workflows-mt.yaml b/configs/workflows-mt.yaml
@@ -19,7 +19,7 @@ Workflows:
     Enabled: True
     Analyte Category: Metatranscriptome
     Git_repo: https://github.com/microbiomedata/metaT_ReadsQC
-    Version: v0.0.3
+    Version: v0.0.7
     WDL: rqcfilter.wdl
     Collection: read_qc_analysis_activity_set
     Filter Input Objects:
@@ -61,7 +61,7 @@ Workflows:
     Enabled: True
     Analyte Category: Metatranscriptome
     Git_repo: https://github.com/microbiomedata/metaT_ReadsQC
-    Version: v0.0.3
+    Version: v0.0.7
     Collection: read_qc_analysis_activity_set
     WDL: interleave_rqcfilter.wdl
     Input_prefix: nmdc_rqcfilter
@@ -104,7 +104,7 @@ Workflows:
     Enabled: True
     Analyte Category: Metatranscriptome
     Git_repo: https://github.com/microbiomedata/metaT_Assembly
-    Version: v0.0.1
+    Version: v0.0.2
     WDL: metaT_assembly.wdl
     Collection: metagenome_assembly_set
     Predecessors:
@@ -157,7 +157,7 @@ Workflows:
     Enabled: True
     Analyte Category: Metatranscriptome
     Git_repo: https://github.com/microbiomedata/mg_annotation
-    Version: v1.1.0
+    Version: v1.1.4
     WDL: annotation_full.wdl
     Collection: metatranscriptome_annotation_set
     Predecessors:
@@ -277,10 +277,10 @@ Workflows:
 
   - Name: Expression Analysis Antisense
     Type: nmdc:MetatranscriptomeExpressionAnalysis
-    Enabled: True
+    Enabled: False
     Analyte Category: Metatranscriptome
     Git_repo: https://github.com/microbiomedata/metaT_ReadCounts
-    Version: v0.0.1
+    Version: v0.0.5
     WDL: readcount.wdl
     Collection: metatranscriptome_expression_analysis_set
     Predecessors:
@@ -300,11 +300,6 @@ Workflows:
       data_object_type: Metatranscriptome Expression 
       description: Expression counts for {id}
       name: Metatranscriptome expression table
-    - output: count_ig
-      data_object_type: Metatranscriptome Expression Intergenic
-      description: Metatranscriptome expression intergenic regions for {id}
-      name: Metatranscriptome expression intergenic table
-      optional: true
     - output: info_file
       data_object_type: Metatranscriptome Expression Info File
       description: Expression info for {id}
@@ -315,7 +310,7 @@ Workflows:
     Enabled: True
     Analyte Category: Metatranscriptome
     Git_repo: https://github.com/microbiomedata/metaT_ReadCounts
-    Version: v0.0.1
+    Version: v0.0.5
     WDL: readcount.wdl
     Collection: metatranscriptome_expression_analysis_set
     Predecessors:
@@ -334,22 +329,17 @@ Workflows:
       data_object_type: Metatranscriptome Expression
       description: Expression counts for {id}
       name: Metatranscriptome expression table
-    - output: count_ig
-      data_object_type: Metatranscriptome Expression Intergenic
-      description: Metatranscriptome expression intergenic regions for {id}
-      name: Metatranscriptome expression intergenic table
-      optional: true
     - output: info_file
       data_object_type: Metatranscriptome Expression Info File
       description: Expression info for {id}
       name: Metatranscriptome Expression Info File
 
   - Name: Expression Analysis Nonstranded
     Type: nmdc:MetatranscriptomeExpressionAnalysis
-    Enabled: True
+    Enabled: False
     Analyte Category: Metatranscriptome
     Git_repo: https://github.com/microbiomedata/metaT_ReadCounts
-    Version: v0.0.1
+    Version: v0.0.5
     WDL: readcount.wdl
     Collection: metatranscriptome_expression_analysis_set
     Predecessors:
@@ -369,11 +359,6 @@ Workflows:
       data_object_type: Metatranscriptome Expression
       description: Expression counts for {id}
       name: Metatranscriptome expression table
-    - output: count_ig
-      data_object_type: Metatranscriptome Expression Intergenic
-      description: Metatranscriptome expression intergenic regions for {id}
-      name: Metatranscriptome expression intergenic table
-      optional: true
     - output: info_file
       data_object_type: Metatranscriptome Expression Info File
       description: Expression info for {id}