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255 readsqc output update v1012 #257

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255 readsqc output update v1012 #257

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4cebc55
Update to read qc in workflows.yaml
aclum Oct 1, 2024
4284c05
readqc version bump in import.yaml
aclum Oct 1, 2024
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2 changes: 1 addition & 1 deletion configs/import.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -3,7 +3,7 @@ Workflows:
Import: true
Type: nmdc:ReadQcAnalysis
Git_repo: https://github.com/microbiomedata/ReadsQC
Version: v1.0.8
Version: v1.0.12
Collection: workflow_execution_set
WorkflowExecutionRange: ReadQcAnalysis
Inputs:
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9 changes: 4 additions & 5 deletions nmdc_automation/config/workflows/workflows.yaml
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Expand Up @@ -19,13 +19,12 @@ Workflows:
Enabled: True
Analyte Category: Metagenome
Git_repo: https://github.com/microbiomedata/ReadsQC
Version: v1.0.8
Version: v1.0.12
WDL: rqcfilter.wdl
Collection: workflow_execution_set
Filter Input Objects:
- Metagenome Raw Reads
Predecessors:
- Sequencing
- Sequencing Interleaved
Input_prefix: nmdc_rqcfilter
Inputs:
Expand Down Expand Up @@ -57,14 +56,14 @@ Workflows:
Enabled: True
Analyte Category: Metagenome
Git_repo: https://github.com/microbiomedata/ReadsQC
Version: v1.0.8
Version: v1.0.12
Collection: workflow_execution_set
WDL: interleave_rqcfilter.wdl
Input_prefix: nmdc_rqcfilter
Inputs:
proj: "{workflow_execution_id}"
input_fastq1: do:Metagenome Raw Read 1
input_fastq2: do:Metagenome Raw Read 2
input_fq1: do:Metagenome Raw Read 1
input_fq2: do:Metagenome Raw Read 2
Filter Input Objects:
- Metagenome Raw Read 1
- Metagenome Raw Read 2
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