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0.2.8 #926

Merged
merged 76 commits into from
Apr 6, 2024
Merged

0.2.8 #926

merged 76 commits into from
Apr 6, 2024

Commits on Nov 6, 2023

  1. 0.2.8

    @DominiqueMakowski
    DominiqueMakowski committed Nov 6, 2023
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  2. Add requests 

    #927
    @DominiqueMakowski
    DominiqueMakowski committed Nov 6, 2023
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  3. Update setup.py 

    #928  #927
    @DominiqueMakowski
    DominiqueMakowski committed Nov 6, 2023
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Commits on Dec 12, 2023

  1. add function head of visibility-graph detector

    @JonasEmrich
    JonasEmrich committed Dec 12, 2023
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Commits on Dec 13, 2023

  1. add FastNVG implementation

    @JonasEmrich
    JonasEmrich committed Dec 13, 2023
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  2. activate detector in ecg_findpeaks()

    @JonasEmrich
    JonasEmrich committed Dec 13, 2023
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  3. fix code formatting

    @JonasEmrich
    JonasEmrich committed Dec 13, 2023
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  4. minor

    @DominiqueMakowski
    DominiqueMakowski committed Dec 13, 2023
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Commits on Dec 14, 2023

  1. adapt cleaning documentation

    @JonasEmrich
    JonasEmrich committed Dec 14, 2023
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  2. updated documentation and removed method by koka2022

    @JonasEmrich
    JonasEmrich committed Dec 14, 2023
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Commits on Dec 15, 2023

  1. Add deprecation warning for method koka2022

    @JonasEmrich
    JonasEmrich committed Dec 15, 2023
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Commits on Dec 18, 2023

  1. [Hotfix] requests is not builtin anymore

    @DominiqueMakowski
    DominiqueMakowski committed Dec 18, 2023
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  2. Add fig2img

    @DominiqueMakowski
    DominiqueMakowski committed Dec 18, 2023
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  3. Merge branch 'master' into dev

    @DominiqueMakowski
    DominiqueMakowski authored Dec 18, 2023
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  4. Update eeg_1min_200hz.pickle

    @DominiqueMakowski
    DominiqueMakowski committed Dec 18, 2023
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  5. Merge branch 'dev' into pr/939

    @DominiqueMakowski
    DominiqueMakowski committed Dec 18, 2023
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Commits on Dec 21, 2023

  1. Merge pull request #939 from JonasEmrich/ecg_peaks_vgmethod 

    [Feature] Add Fast Visibility Graph Based ECG R-peak Detector
    @DominiqueMakowski
    DominiqueMakowski authored Dec 21, 2023
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Commits on Jan 2, 2024

  1. remove tests from project

    Jonghoe Ku committed Jan 2, 2024
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  2. change prune to recursive-exclude tests

    Jonghoe Ku committed Jan 2, 2024
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Commits on Jan 3, 2024

  1. Merge pull request #941 from Ninebell/dev 

    Remove tests from pyproject
    @DominiqueMakowski
    DominiqueMakowski authored Jan 3, 2024
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Commits on Jan 4, 2024

  1. Optimise _ecg_findpeaks_elgendi 

    Signed-off-by: Stavros Avramidis <[email protected]>
    @purpl3F0x
    purpl3F0x committed Jan 4, 2024
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Commits on Jan 10, 2024

  1. Merge pull request #943 from purpl3F0x/dev 

    Optimise _ecg_findpeaks_elgendi
    @DominiqueMakowski
    DominiqueMakowski authored Jan 10, 2024
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  2. [Fix + Improvement] Faster _ecg_findpeaks_hamilton and bug-fix 

    Signed-off-by: Stavros Avramidis <[email protected]>
    @purpl3F0x
    purpl3F0x committed Jan 10, 2024
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Commits on Jan 17, 2024

  1. Added minimum N in rodrigues2021 peaks detector

    @LucaCerina
    LucaCerina committed Jan 17, 2024
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  2. Merge pull request #949 from LucaCerina/bugfix-function_ecg_findpeaks… 

    …_rodrigues

[Fix] Fixed rodrigues2021 ECG peaks detector (make it work with < 50Hz sampling rate)
    @DominiqueMakowski
    DominiqueMakowski authored Jan 17, 2024
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Commits on Jan 18, 2024

  1. update docstring to reflect implementation of khodadad2018

    @danibene
    danibene authored Jan 18, 2024
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  2. update description of khodadad2018 to reflect implementation of cleaning

    @danibene
    danibene authored Jan 18, 2024
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Commits on Jan 19, 2024

  1. Merge pull request #952 from danibene/docs/rsp_clean_khodadad2018 

    [Docs] update docs to reflect implementation of respiration signal cleaning with khodadad2018
    @DominiqueMakowski
    DominiqueMakowski authored Jan 19, 2024
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Commits on Jan 21, 2024

  1. Merge pull request #947 from purpl3F0x/dev 

    [Fix + Improvement] Faster _ecg_findpeaks_hamilton and bug-fix
    @DominiqueMakowski
    DominiqueMakowski authored Jan 21, 2024
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Commits on Feb 5, 2024

  1. [BUG] rr xcorr arange steps don't match 

    Line 128 uses step size of 0.25/50, but line 137 uses 0.25/60

I think this is a typo, but please close if I'm wrong!
    @birm
    birm authored Feb 5, 2024
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Commits on Feb 17, 2024

  1. Fix poetry config

    @stasinos
    stasinos committed Feb 17, 2024
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  2. Make sparsEDA return a (tonic,phasic) pair

    @stasinos
    stasinos committed Feb 17, 2024
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  3. Fix wrong variable name

    @stasinos
    stasinos committed Feb 17, 2024
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  4. Add dep to cvxopt to also execute cvxEDA test

    @stasinos
    stasinos committed Feb 17, 2024
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  5. Send resampled signal to sparsEDA algorithm 

    The input was resampled to 8Hz as required by
sparsEDA, but the padded signalAdd variable that
is actually used was assigned before resampling.
    @stasinos
    stasinos committed Feb 17, 2024
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  6. Fix version number

    @stasinos
    stasinos committed Feb 17, 2024
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  7. SCR should be computed before resampling back to original sr

    @stasinos
    stasinos committed Feb 17, 2024
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  8. Use new_sr instead of original sampling_rate

    @stasinos
    stasinos committed Feb 17, 2024
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  9. Comment out assigning MSE to avoid style check fail

    @stasinos
    stasinos committed Feb 17, 2024
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Commits on Feb 29, 2024

  1. Update ecg_hrv.ipynb 

    Fixed a typo.
    @Adam-Antios
    Adam-Antios authored Feb 29, 2024
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Commits on Mar 2, 2024

  1. Merge pull request #967 from Adam-Antios/patch-1 

    Update ecg_hrv.ipynb
    @danibene
    danibene authored Mar 2, 2024
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  2. Commit style fixes

    @DominiqueMakowski
    DominiqueMakowski committed Mar 2, 2024
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  3. use loc to index dataframe

    @danibene
    danibene authored Mar 2, 2024
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  4. Commit style fixes

    @danibene
    danibene committed Mar 2, 2024
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  5. fix order of inputs to loc

    @danibene
    danibene authored Mar 2, 2024
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  6. use .loc to index df_offsets

    @danibene
    danibene authored Mar 2, 2024
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  7. actually use .loc to index df_offsets (wow, tests are important)

    @danibene
    danibene authored Mar 2, 2024
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  8. use .loc in utils_complexity_symbolize

    @danibene
    danibene authored Mar 2, 2024
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  9. Update utils_complexity_symbolize.py

    @danibene
    danibene authored Mar 2, 2024
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  10. replace "L" by "ms"

    @danibene
    danibene authored Mar 2, 2024
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  11. replace with "ms" in resampling_factor

    @danibene
    danibene authored Mar 2, 2024
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Commits on Mar 3, 2024

  1. Merge pull request #960 from birm/patch-1 

    [FIX] rr xcorr arange steps don't match
    @DominiqueMakowski
    DominiqueMakowski authored Mar 3, 2024
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  2. Merge pull request #968 from danibene/fix/build_docs_warning 

    [Fix] build docs warning
    @danibene
    danibene authored Mar 3, 2024
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Commits on Mar 10, 2024

  1. refactor hamilton method

    @danibene
    danibene authored Mar 10, 2024
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  2. add expected_ecg_findpeaks_hamilton_good_4000.csv

    @danibene
    danibene authored Mar 10, 2024
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  3. add expected_ecg_findpeaks_hamilton_bad_500.csv

    @danibene
    danibene authored Mar 10, 2024
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  4. add regression test for ecg_findpeaks_hamilton

    @danibene
    danibene authored Mar 10, 2024
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  5. include _ecg_findpeaks_hamilton in tests_ecg_findpeaks

    @danibene
    danibene authored Mar 10, 2024
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  6. reformat dev version with black

    @danibene
    danibene authored Mar 10, 2024
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Commits on Mar 11, 2024

  1. update expected results after changes in 0.2.8

    @danibene
    danibene authored Mar 11, 2024
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  2. update expected bad 500 results after changes in 0.2.8

    @danibene
    danibene authored Mar 11, 2024
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  3. add flag for when missed peak is added

    @danibene
    danibene authored Mar 11, 2024
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  4. remote extra imports

    @danibene
    danibene authored Mar 11, 2024
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Commits on Mar 12, 2024

  1. adding sampling rate parameter to eda_intervalrelated method

    @tilly111
    tilly111 committed Mar 12, 2024
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Commits on Mar 22, 2024

  1. [Fix] read_acqknowledge now also imports duplicated channel names

    @DerAndereJohannes
    DerAndereJohannes committed Mar 22, 2024
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Commits on Mar 24, 2024

  1. [Feature] stim_events_find to retrieve multi-channel stimulus events

    @DerAndereJohannes
    DerAndereJohannes committed Mar 24, 2024
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  2. Merge pull request #966 from stasinos/issue-964 

    sparsEDA integration
    @DominiqueMakowski
    DominiqueMakowski authored Mar 24, 2024
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  3. Merge pull request #974 from tilly111/bugfix-eda_analyze_sampling_rate 

    [Fix] adding sampling rate parameter to eda_intervalrelated method
    @DominiqueMakowski
    DominiqueMakowski authored Mar 24, 2024
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  4. Merge pull request #975 from DerAndereJohannes/fix_acqknowledge_dupli… 

    …cate_channel_names

[Fix] read_acqknowledge now also imports duplicated channel names
    @DominiqueMakowski
    DominiqueMakowski authored Mar 24, 2024
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  5. Merge pull request #973 from danibene/fix/ecg_findpeaks_refactor 

    [Fix] refactor ecg_findpeaks
    @danibene
    danibene authored Mar 24, 2024
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Commits on Mar 26, 2024

  1. Rework stim_events_find into events_find

    @DerAndereJohannes
    DerAndereJohannes committed Mar 26, 2024
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Commits on Mar 31, 2024

  1. Make the events non-overlapping 

    I think it's a clearer demonstration of a possible usecase
    @DominiqueMakowski
    DominiqueMakowski committed Mar 31, 2024
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  2. [Fix] Update changelog to reflect changing find_events

    @DerAndereJohannes
    DerAndereJohannes authored Mar 31, 2024
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Commits on Apr 1, 2024

  1. Merge pull request #976 from DerAndereJohannes/find_stimulus_events 

    [Feature] stim_events_find to retrieve multi-channel stimulus events
    @DominiqueMakowski
    DominiqueMakowski authored Apr 1, 2024
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  2. [Feature] add 'columns' selection argument in epochs_plot()

    @DominiqueMakowski
    DominiqueMakowski committed Apr 1, 2024
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  3. Remove codeclimate

    @DominiqueMakowski
    DominiqueMakowski committed Apr 1, 2024
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