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configs
PublicConfig files used to define parameters specific to compute environments at different Institutions- Call and score variants from WGS/WES of rare disease patients.
- Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
sarek
PublicAnalysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencingmodules
Publicmultiplesequencealign
Public- Demultiplexing pipeline for sequencing data
smrnaseq
Publicscrnaseq
PublicA single-cell RNAseq pipeline for 10X genomics data- circRNA quantification, differential expression analysis and miRNA target prediction of RNA-Seq data
- Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel
- Simple bacterial assembly and annotation pipeline
magmap
Publiceager
PublicA fully reproducible and state-of-the-art ancient DNA analysis pipelineproteinfold
PublicProtein 3D structure prediction pipelineatacseq
Public