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Pull requests: nf-core/modules

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Pull requests list

ci: Only run GPU tags and rely on "changed-since"
#7021 opened Nov 19, 2024 by edmundmiller • Draft
@edmundmiller
chore(deps): update github actions
#7020 opened Nov 19, 2024 by renovate bot Loading…
2 tasks
1
change stageInMode to copy and update module
#7014 opened Nov 18, 2024 by famosab Loading…
17 tasks
update bcftools pluginsplit
#7013 opened Nov 18, 2024 by LouisLeNezet Loading…
3 of 17 tasks
22
update preseq/lcextrap errorStrategy to ignore Ready for Review
#7011 opened Nov 18, 2024 by sateeshperi Loading…
4
Fasta create index bismark bwameth new subworkflow Ready for Review
#7010 opened Nov 17, 2024 by sateeshperi Loading…
1
@sateeshperi
adding mgikit module
#7008 opened Nov 17, 2024 by ziadbkh Loading…
8 of 17 tasks
1
2
Fastq align dedup bwameth new subworkflow Ready for Review
#7007 opened Nov 17, 2024 by sateeshperi Loading…
1
@sateeshperi
fq lint module update: exit on failed validation
#7000 opened Nov 15, 2024 by oligomyeggo Loading…
17 tasks
9
Port sentieon bwaindex to nf-test
#6999 opened Nov 15, 2024 by maxulysse Loading…
17 tasks
build: Add environment.yml for doubletdetection
#6997 opened Nov 14, 2024 by edmundmiller Loading…
@edmundmiller
port parabricks/indexgvcf to nf-test gpu module uses GPU nf-test
#6996 opened Nov 14, 2024 by famosab Loading…
1 of 17 tasks
1
port parabricks/deepvariant to nf-test gpu module uses GPU help wanted Extra attention is needed nf-test
#6995 opened Nov 14, 2024 by famosab Loading…
1 of 17 tasks
1
update malt/build module
#6994 opened Nov 14, 2024 by LilyAnderssonLee Loading…
17 tasks
1
1
port parabricks/mutectcaller to nf-test gpu module uses GPU help wanted Extra attention is needed nf-test
#6991 opened Nov 14, 2024 by famosab Loading…
17 tasks
1
Update busco_busco config and windowmasker_convert config
#6990 opened Nov 14, 2024 by mahesh-panchal Loading…
1 of 17 tasks
port parabricks/genotypegvcf to nf-test gpu module uses GPU nf-test
#6980 opened Nov 13, 2024 by famosab Loading…
1 of 17 tasks
Port parabricks/dbsnp to nf-test gpu module uses GPU nf-test
#6977 opened Nov 12, 2024 by famosab Loading…
4 of 17 tasks
2
Parabricks haplotypecaller version update and tests migrated to nf-test help wanted Extra attention is needed
#6976 opened Nov 12, 2024 by Furentsu Loading…
6 of 17 tasks
@Furentsu
32
Add nanoqc module Ready for Review
#6969 opened Nov 11, 2024 by lfreitasl Loading…
11 of 16 tasks
1
@lfreitasl
5
New module: hostile/clean
#6966 opened Nov 11, 2024 by jfy133 Loading…
17 tasks
3
Adding celda/decontx module
#6960 opened Nov 8, 2024 by lea-lenhardtackovic Loading…
12 of 14 tasks
11
Add missing file input to bcftools/annotate
#6942 opened Nov 6, 2024 by fellen31 Loading…
17 tasks
1
Remove langage server warnings
#6937 opened Nov 5, 2024 by maxulysse Loading…
17 tasks
2
Add coptr module
#6935 opened Nov 5, 2024 by ramirobarrantes Loading…
17 tasks
1
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