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Template static properties + consistency check #49

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merged 8 commits into from
Sep 17, 2024
Merged

Template static properties + consistency check #49

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565799c
Add consistency check before starting analysis session.
ondrej33 Sep 8, 2024
c3ae9d0
Refactor and extend consistency checking.
ondrej33 Sep 8, 2024
796bb17
Add translation to FOL for regulation properties, update FOL eval.
ondrej33 Sep 9, 2024
b1f8e4a
Add evaluation for static templates; add consistency check for static…
ondrej33 Sep 15, 2024
d1e1230
Add consistency check for context formulas in static properties.
ondrej33 Sep 15, 2024
0730f8e
Add encoding for dual regulations + update todos/docstrings.
ondrej33 Sep 16, 2024
43cc521
Add more example models and data descriptions.
ondrej33 Sep 17, 2024
159c91b
Add button to hide automatically generated regulation properties.
ondrej33 Sep 17, 2024
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37 changes: 37 additions & 0 deletions data/real_cases/arabidopsis.aeon
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## PROPERTIES
#! dynamic_property: fp1: #`(3{x}: (@{x}: (AGO1 & ~AGO10 & ~AGO7 & ANT & ARF4 & ~AS1 & ~AS2 & ETT & FIL & KAN1 & miR165 & miR390 & ~REV & ~TAS3siRNA & AGO1_miR165 & ~AGO7_miR390 & ~AS1_AS2 & AUXINh & ~CKh & ~GTE6 & ~IPT5 & (AX (AGO1 & ~AGO10 & ~AGO7 & ANT & ARF4 & ~AS1 & ~AS2 & ETT & FIL & KAN1 & miR165 & miR390 & ~REV & ~TAS3siRNA & AGO1_miR165 & ~AGO7_miR390 & ~AS1_AS2 & AUXINh & ~CKh & ~GTE6 & ~IPT5)))))`#
#! dynamic_property: fp2: #`(3{x}: (@{x}: (~AGO1 & AGO10 & AGO7 & ANT & ~ARF4 & AS1 & AS2 & ~ETT & ~FIL & ~KAN1 & ~miR165 & miR390 & REV & TAS3siRNA & ~AGO1_miR165 & AGO7_miR390 & AS1_AS2 & AUXINh & CKh & GTE6 & IPT5 & (AX (~AGO1 & AGO10 & AGO7 & ANT & ~ARF4 & AS1 & AS2 & ~ETT & ~FIL & ~KAN1 & ~miR165 & miR390 & REV & TAS3siRNA & ~AGO1_miR165 & AGO7_miR390 & AS1_AS2 & AUXINh & CKh & GTE6 & IPT5)))))`#

## MODEL
AUXINh ->? AUXINh
AUXINh ->? miR390
miR390 -> AGO7_miR390
AGO7 -> AGO7_miR390
REV ->? AGO7
AUXINh ->? REV
AGO1_miR165 -| REV
AUXINh ->? ANT
AUXINh ->? ARF4
FIL ->? ARF4
TAS3siRNA -| ARF4
ANT ->? FIL
ARF4 ->? FIL
ETT ->? FIL
AGO7_miR390 -> TAS3siRNA
FIL ->? ETT
TAS3siRNA -| ETT
FIL ->? KAN1
AS1_AS2 -|? KAN1
AS2 -> AS1_AS2
AS1 -> AS1_AS2
miR165 -> AGO1_miR165
AGO1 -> AGO1_miR165
KAN1 -| AS2
GTE6 -> AS1
CKh ->? GTE6
TAS3siRNA -|? miR165
AS1_AS2 -|? miR165
IPT5 -> CKh
REV ->? IPT5
AGO10 -|? AGO1
REV ->? AGO10
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